py-cutadapt: Upgrade to 2.5

diff --git a/py-cutadapt/Makefile b/py-cutadapt/Makefile
index f089b765191cc8487feac39a48c2f74fb128f340..14792fbed4167e328739db3db19cd676d3a5a2f9 100644 (file)
--- a/py-cutadapt/Makefile
+++ b/py-cutadapt/Makefile
@@ -4,7 +4,7 @@
 #               Generated by fbsd2pkg                     #
 ###########################################################
 
-DISTNAME=      cutadapt-${PORTVERSION}
+DISTNAME=      cutadapt-2.5
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_PYPI:=c/cutadapt/}
@@ -19,7 +19,5 @@ DEPENDS+=     ${PYPKGPREFIX}-xopen>=0:../../devel/py-xopen
 USE_LANGUAGES= c
 PYDISTUTILSPKG=        yes
 
-PORTVERSION=   1.14
-
 .include "../../lang/python/egg.mk"
 .include "../../mk/bsd.pkg.mk"

diff --git a/py-cutadapt/PLIST b/py-cutadapt/PLIST
index b8a188efe45f59ca7511f0a95ff9cd98b92bd8b8..f1052a859b5b4a1ad003a9ee111979fd80a70f5b 100644 (file)
--- a/py-cutadapt/PLIST
+++ b/py-cutadapt/PLIST
@@ -7,44 +7,40 @@ ${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
 ${PYSITELIB}/${EGG_INFODIR}/requires.txt
 ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
 ${PYSITELIB}/cutadapt/__init__.py
-${PYSITELIB}/cutadapt/__init__.pyc
+${PYSITELIB}/cutadapt/__main__.py
 ${PYSITELIB}/cutadapt/__init__.pyo
+${PYSITELIB}/cutadapt/__init__.pyc
+${PYSITELIB}/cutadapt/__main__.pyo
+${PYSITELIB}/cutadapt/__main__.pyc
+${PYSITELIB}/cutadapt/_version.pyo
+${PYSITELIB}/cutadapt/_version.pyc
+${PYSITELIB}/cutadapt/adapters.pyo
+${PYSITELIB}/cutadapt/adapters.pyc
+${PYSITELIB}/cutadapt/align.pyo
+${PYSITELIB}/cutadapt/align.pyc
+${PYSITELIB}/cutadapt/filters.pyo
+${PYSITELIB}/cutadapt/filters.pyc
+${PYSITELIB}/cutadapt/log.pyo
+${PYSITELIB}/cutadapt/log.pyc
+${PYSITELIB}/cutadapt/modifiers.pyo
+${PYSITELIB}/cutadapt/modifiers.pyc
+${PYSITELIB}/cutadapt/parser.pyo
+${PYSITELIB}/cutadapt/parser.pyc
+${PYSITELIB}/cutadapt/pipeline.pyo
+${PYSITELIB}/cutadapt/pipeline.pyc
+${PYSITELIB}/cutadapt/report.pyo
+${PYSITELIB}/cutadapt/report.pyc
+${PYSITELIB}/cutadapt/utils.pyo
+${PYSITELIB}/cutadapt/utils.pyc
 ${PYSITELIB}/cutadapt/_align.so
-${PYSITELIB}/cutadapt/_qualtrim.so
-${PYSITELIB}/cutadapt/_seqio.so
 ${PYSITELIB}/cutadapt/_version.py
-${PYSITELIB}/cutadapt/_version.pyc
-${PYSITELIB}/cutadapt/_version.pyo
 ${PYSITELIB}/cutadapt/adapters.py
-${PYSITELIB}/cutadapt/adapters.pyc
-${PYSITELIB}/cutadapt/adapters.pyo
 ${PYSITELIB}/cutadapt/align.py
-${PYSITELIB}/cutadapt/align.pyc
-${PYSITELIB}/cutadapt/align.pyo
-${PYSITELIB}/cutadapt/colorspace.py
-${PYSITELIB}/cutadapt/colorspace.pyc
-${PYSITELIB}/cutadapt/colorspace.pyo
-${PYSITELIB}/cutadapt/compat.py
-${PYSITELIB}/cutadapt/compat.pyc
-${PYSITELIB}/cutadapt/compat.pyo
 ${PYSITELIB}/cutadapt/filters.py
-${PYSITELIB}/cutadapt/filters.pyc
-${PYSITELIB}/cutadapt/filters.pyo
+${PYSITELIB}/cutadapt/log.py
 ${PYSITELIB}/cutadapt/modifiers.py
-${PYSITELIB}/cutadapt/modifiers.pyc
-${PYSITELIB}/cutadapt/modifiers.pyo
-${PYSITELIB}/cutadapt/qualtrim.py
-${PYSITELIB}/cutadapt/qualtrim.pyc
-${PYSITELIB}/cutadapt/qualtrim.pyo
+${PYSITELIB}/cutadapt/parser.py
+${PYSITELIB}/cutadapt/pipeline.py
+${PYSITELIB}/cutadapt/qualtrim.so
 ${PYSITELIB}/cutadapt/report.py
-${PYSITELIB}/cutadapt/report.pyc
-${PYSITELIB}/cutadapt/report.pyo
-${PYSITELIB}/cutadapt/scripts/__init__.py
-${PYSITELIB}/cutadapt/scripts/__init__.pyc
-${PYSITELIB}/cutadapt/scripts/__init__.pyo
-${PYSITELIB}/cutadapt/scripts/cutadapt.py
-${PYSITELIB}/cutadapt/scripts/cutadapt.pyc
-${PYSITELIB}/cutadapt/scripts/cutadapt.pyo
-${PYSITELIB}/cutadapt/seqio.py
-${PYSITELIB}/cutadapt/seqio.pyc
-${PYSITELIB}/cutadapt/seqio.pyo
+${PYSITELIB}/cutadapt/utils.py

diff --git a/py-cutadapt/distinfo b/py-cutadapt/distinfo
index 6d9b648a89dcd6ce4d454dcd4cf1c6fd630cf0d5..526724b8ecfa5edf24829b6e7f909a189f15804f 100644 (file)
--- a/py-cutadapt/distinfo
+++ b/py-cutadapt/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (cutadapt-1.14.tar.gz) = cffd036c46e1c159fee6b0da23b175499023de37
-RMD160 (cutadapt-1.14.tar.gz) = 591f69a597f04a04a09538cb67d832a838d5a404
-SHA512 (cutadapt-1.14.tar.gz) = 22028c586801293e1942525f343ee72e590f8a10a3244e9aaadaded45a6f4e126f66d0fd6a6aa821b70d36a9735b7cc74f6582f9fe13b6273387f9d917d55a43
-Size (cutadapt-1.14.tar.gz) = 283631 bytes
+SHA1 (cutadapt-2.5.tar.gz) = bc92e43825d5d10892b69cdbd21448f17353c477
+RMD160 (cutadapt-2.5.tar.gz) = dacb42583d0dea114b2bcf42ac7da9d2c79e3436
+SHA512 (cutadapt-2.5.tar.gz) = fa114dc4d8dfc03325c1bc8b41101aa1dfac7b3fbbf71d98bd3422cb054ae1b475e0cdc56519a49cba95e432d5fec3b8abe4f58b915ad487f335f0fd62994715
+Size (cutadapt-2.5.tar.gz) = 269321 bytes