biolibc-tools: High-performance bioinformatics tools based on biolibc

diff --git a/Makefile b/Makefile
index 90f4e4d770494dde8866811b24ee67f00f81a73b..3822e36d8d0a41c2903c4435cf9aa50b9f7d3c29 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -274,6 +274,7 @@ SUBDIR+=    bijiben
 SUBDIR+=       bindgraph
 SUBDIR+=       binutils-gold-git
 SUBDIR+=       biolibc
+SUBDIR+=       biolibc-tools
 SUBDIR+=       biopython
 SUBDIR+=       bioruby
 SUBDIR+=       bip

diff --git a/biolibc-tools/DESCR b/biolibc-tools/DESCR
new file mode 100644 (file)
index 0000000..4eaefc5
--- /dev/null
+++ b/biolibc-tools/DESCR
@@ -0,0 +1,4 @@
+Biolibc-tools is a collection of simple fast, memory-efficient,
+programs for processing biological data.  These are simple programs
+built on biolibc that are not complex enough to warrant a separate
+project.

diff --git a/biolibc-tools/Makefile b/biolibc-tools/Makefile
new file mode 100644 (file)
index 0000000..3c71913
--- /dev/null
+++ b/biolibc-tools/Makefile
@@ -0,0 +1,25 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Mon Aug 16 17:37:49 CDT 2021               #
+###########################################################
+
+DISTNAME=      biolibc-tools-0.1.0.4
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+GITHUB_TAG=    a59e9fff53c10c722767df09de4421e25e1f3e75
+
+MAINTAINER=    bacon@NetBSD.org
+HOMEPAGE=      https://github.com/auerlab/biolibc-tools
+COMMENT=       High-performance bioinformatics tools based on biolibc
+LICENSE=       2-clause-bsd
+
+INSTALL_TARGET=        install-strip
+
+pre-build:
+       (cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend)
+
+.include "../../wip/biolibc/buildlink3.mk"
+.include "../../wip/libxtend/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"

diff --git a/biolibc-tools/PLIST b/biolibc-tools/PLIST
new file mode 100644 (file)
index 0000000..af64ca1
--- /dev/null
+++ b/biolibc-tools/PLIST
@@ -0,0 +1,6 @@
+@comment $NetBSD$
+bin/fastq-dedup
+bin/fastq2tsv
+libexec/biolibc-tools/uniq-seqs.awk
+man/man1/fastq-dedup.1
+man/man1/fastq2tsv.1

diff --git a/biolibc-tools/distinfo b/biolibc-tools/distinfo
new file mode 100644 (file)
index 0000000..7deeaca
--- /dev/null
+++ b/biolibc-tools/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 95c802ea6ed34ed0de2135802075948af02ab97c
+RMD160 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 07fedf7386d1f651eedb520e8dbcbcf1ebf5cac6
+SHA512 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = d16dc987f31ee4bb217f32f65a36b108742f72492c33d78d30bade041a447d4d76f1eaeef884fb0f75fa4392297ea1693481a5fb099e5d94b4953650bbc29b22
+Size (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 8902 bytes